TcIL3000_2_890

small nuclear ribonucleoprotein SmD1, putative
Trypanosoma congolense IL3000 OG6: OG6_101868 OG7: OG7_0004920 86 interactions (filtered)
Experimental Direct co-fractionation MS evidence Computational Inferred by orthology (OG) transfer ⚠ Ambiguous: multiple orthologs in target organism OG6 / OG7 Ortholog group version used
Source datasets
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Interactions 86 total
Partner Experimental (Co-frac/MS) Computational (OG inference) OG
TcIL3000.11.15690
U5 snRNP-associated 102 kDa protein, putative
— Both
TcIL3000_5_4560 ⚠
U6 snRNA-associated Sm-like protein LSm7p, pu
— OG7
TcIL3000_10_4140 ⚠
small nuclear ribonucleoprotein, putative
— OG7
TcIL3000_6_2360 ⚠
WD domain, G-beta repeat, putative
— OG7
TcIL3000.11.12030 ⚠
receptor for activated C kinase 1
— OG7
TcIL3000.11.14030 ⚠
ornithine decarboxylase, putative
— Both
TcIL3000_0_32090 ⚠
ornithine decarboxylase
— Both
TcIL3000.11.380
conserved protein
— Both
TcIL3000_0_05260 ⚠
heat shock protein HslVU, ATPase subunit HslU
— Both
TcIL3000_5_1430 ⚠
ATP-dependent protease ATPase subunit HslU1,
— Both
TcIL3000_10_12440 ⚠
ATP-dependent RNA helicase HEL67
— Both
TcIL3000_9_1040 ⚠
U6 snRNA-associated Sm-like protein LSm6p, Sm
— OG7
TcIL3000.11.14090 ⚠
U5 small nuclear ribonucleoprotein component,
— Both
TcIL3000_0_04510
RNA-binding protein
— OG6
TcIL3000.11.10810
hypothetical protein, conserved
— Both
TcIL3000.11.2280 ⚠
metallo-peptidase, Clan MF, Family M17 (fragm
— Both
TcIL3000_4_2760
EAP30/Vps36 family, putative
— Both
TcIL3000_3_3520 ⚠
tryptophanyl-tRNA synthetase, putative
— Both
TcIL3000_0_30560 ⚠
tryptophanyl-tRNA synthetase
— Both
TcIL3000_0_42660
leucine-rich repeat-containing protein
— Both
TcIL3000_9_5840
helicase, putative
— OG6
TcIL3000_10_8020
adenylyl cyclase-associated protein, putative
— Both
TcIL3000_7_2670 ⚠
peptidyl-prolyl cis-trans isomerase, putative
— OG7
TcIL3000_10_3760 ⚠
elongation factor 2, putative
— OG7
TcIL3000_3_1280 ⚠
translation elongation factor EF-2, putative
— OG7
TcIL3000_8_1270 ⚠
ATP-dependent RNA helicase DBP2B, putative
— OG7
TcIL3000.11.9180 ⚠
DEAD-box ATP-dependent RNA helicase, mitochon
— OG7
TcIL3000_0_56050 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000_0_04480 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000_8_3710 ⚠
mitochondrial, ATP-dependent DEAD/H RNA helic
— OG7
TcIL3000_10_5710 ⚠
ATP-dependent RNA helicase DBP2A, putative
— OG7
TcIL3000_5_4040 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000_8_1290 ⚠
hypothetical protein
— OG7
TcIL3000_0_24310 ⚠
hypothetical protein (fragment)
— Both
TcIL3000_10_13380 ⚠
FKBP-type peptidylprolyl cis-trans isomerase,
— OG7
TcIL3000_10_3830 ⚠
peptidyl-prolyl cis-trans isomerase, putative
— OG7
TcIL3000_8_2240 ⚠
tryptophanyl-tRNA synthetase, putative
— OG7
TcIL3000_0_03850 ⚠
FK506-binding protein (FKBP)-type peptidyl-pr
— OG7
TcIL3000_10_13370 ⚠
macrophage infectivity potentiator, precursor
— OG7
TcIL3000_10_1740 ⚠
elongation factor 1-alpha, putative
— OG7
TcIL3000_10_1730 ⚠
elongation factor 1-alpha, putative (fragment
— OG7
TcIL3000_9_4330 ⚠
Elongation factor Tu GTP binding domain conta
— OG7
TcIL3000_9_4320 ⚠
elongation factor 1-alpha, putative
— OG7
TcIL3000_0_54460 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_9_2040 ⚠
E1-like ubiquitin-activating enzyme, putative
— Both
TcIL3000_10_7160
RNA-binding protein 14
— Both
TcIL3000_0_08990 ⚠
SET domain containing protein, putative
— OG6
TcIL3000_5_2910 ⚠
SET domain containing protein, putative
— OG6
TcIL3000_10_190
hypothetical protein, conserved
— Both
TcIL3000_0_40200 ⚠
heat shock 70 kDa protein, putative
— OG6
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Orthogroup expansion — connections between the query proteins
list 30/60/…
How many partner orthogroups appear in the table below. It does not change the analysis — the counts in the summary line always cover all partners.
degree ≤ N
Drops partners that interact with more than N orthogroups across the whole network. Promiscuous hubs connect to everything and explain nothing: the top partner of this query set by raw degree is a retrotransposon hot spot protein touching 586 orthogroups.
Score
(queries touched + 2 if bridge + 0.5 if other-network) ÷ log2(2 + degree). Rewards partners that connect the query set; penalises promiscuity.
Queries
How many of the query proteins' orthogroups this partner interacts with. 2 or more makes it a shared partner.
bridge
It links query proteins that came from different organisms.
other network
At least one of its links is supported only by a dataset from an organism other than that query protein's own — invisible in the network being searched. This is the discovery signal.
complex N
The partner belongs to conserved complex N (two or more datasets).
hub
Degree above 150 — interpret with care.
Click Analyse to look for partners that link the query proteins through the orthogroup network, including links only visible in another organism's dataset.