TcIL3000_10_6420

Ribosomal RNA processing protein 41A
Trypanosoma congolense IL3000 OG6: OG6_101074 OG7: OG7_0002908 39 interactions (filtered)
Experimental Direct co-fractionation MS evidence Computational Inferred by orthology (OG) transfer ⚠ Ambiguous: multiple orthologs in target organism OG6 / OG7 Ortholog group version used
Source datasets
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Interactions 39 total
Partner Experimental (Co-frac/MS) Computational (OG inference) OG
TcIL3000_6_210 ⚠
ribosomal RNA processing protein 45, putative
— +2 more Both
TcIL3000_0_13330 ⚠
ribosomal RNA processing protein 4
— Both
TcIL3000.11.16520 ⚠
exosome-associated protein 2
— +2 more Both
TcIL3000_0_51360 ⚠
RNA polymerase beta subunit/RNA polymerase Rp
— OG7
TcIL3000.11.11980 ⚠
heat shock protein 70, putative
— OG6
TcIL3000.11.610 ⚠
RNA polymerase I second largest subunit (frag
— Both
TcIL3000_0_40210 ⚠
heat shock 70 kDa protein, putative (fragment
— OG6
TcIL3000_0_40200 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000.11.620 ⚠
RNA polymerase I second largest subunit (frag
— Both
TcIL3000_10_4890 ⚠
translation elongation factor 1-beta, putativ
— Both
TcIL3000_10_13310 ⚠
signal recognition particle protein, putative
— Both
TcIL3000_0_54840 ⚠
ribosomal RNA processing protein 41B, putativ
— OG7
TcIL3000.11.11990 ⚠
luminal binding protein 1 (BiP), putative
— OG6
TcIL3000_0_32940 ⚠
DNA-directed RNA polymerase II subunit 2, put
— OG7
TcIL3000_0_29100 ⚠
DNA-directed RNA polymerase II subunit 2, put
— OG7
TcIL3000_1_120 ⚠
DNA-directed RNA polymerase III, putative
— OG7
TcIL3000_4_3350 ⚠
DNA-directed RNA polymerase II subunit 2, put
— OG7
TcIL3000.11.11750 ⚠
exosome-associated protein 4
— OG7
TcIL3000_4_1200 ⚠
ribosomal RNA processing protein 6, putative
— OG7
TcIL3000_0_09310 ⚠
ribosomal RNA processing protein 6 (fragment)
— OG7
TcIL3000.11.12860 ⚠
ATP-dependent protease ATPase subunit HslU2
— OG7
TcIL3000_0_40190 ⚠
heat shock protein 70 (hsp70), putative
— OG6
TcIL3000_0_05260 ⚠
heat shock protein HslVU, ATPase subunit HslU
— Both
TcIL3000_10_6470 ⚠
hypothetical protein, conserved
— Both
TcIL3000_0_26920 ⚠
hypothetical protein, conserved
— Both
TcIL3000_2_780 ⚠
hypothetical protein, conserved
— Both
TcIL3000_2_120 ⚠
hypothetical protein, conserved
— Both
TcIL3000_1_1340 ⚠
exosome-associated protein 1, putative
— Both
TcIL3000_0_01730 ⚠
hypothetical protein, conserved
— Both
TcIL3000_0_54610 ⚠
hypothetical protein, conserved (fragment)
— Both
TcIL3000.11.11940 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_0_02950 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_0_21650 ⚠
Hsp70 protein, putative (fragment)
— OG6
TcIL3000_0_55930 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_3_560 ⚠
hypothetical protein, conserved
— Both
TcIL3000_0_54460 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_3_380 ⚠
Conserved hypothetical ATP binding protein, p
— Both
TcIL3000_5_1430 ⚠
ATP-dependent protease ATPase subunit HslU1,
— Both
TcIL3000_5_1110 ⚠
exosome component CSL4, putative
— Both
Orthogroup expansion — connections between the query proteins
list 30/60/…
How many partner orthogroups appear in the table below. It does not change the analysis — the counts in the summary line always cover all partners.
degree ≤ N
Drops partners that interact with more than N orthogroups across the whole network. Promiscuous hubs connect to everything and explain nothing: the top partner of this query set by raw degree is a retrotransposon hot spot protein touching 586 orthogroups.
Score
(queries touched + 2 if bridge + 0.5 if other-network) ÷ log2(2 + degree). Rewards partners that connect the query set; penalises promiscuity.
Queries
How many of the query proteins' orthogroups this partner interacts with. 2 or more makes it a shared partner.
bridge
It links query proteins that came from different organisms.
other network
At least one of its links is supported only by a dataset from an organism other than that query protein's own — invisible in the network being searched. This is the discovery signal.
complex N
The partner belongs to conserved complex N (two or more datasets).
hub
Degree above 150 — interpret with care.
Click Analyse to look for partners that link the query proteins through the orthogroup network, including links only visible in another organism's dataset.