TcIL3000_0_29030

geranylgeranyl transferase type II beta subunit, putative
Trypanosoma congolense IL3000 OG6: OG6_102449 OG7: OG7_0002914 98 interactions (filtered)
Experimental Direct co-fractionation MS evidence Computational Inferred by orthology (OG) transfer ⚠ Ambiguous: multiple orthologs in target organism OG6 / OG7 Ortholog group version used
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Interactions 98 total
Partner Experimental (Co-frac/MS) Computational (OG inference) OG
TcIL3000.11.6000 ⚠
replication factor C, subunit 1, putative
— OG7
TcIL3000_10_1100 ⚠
hypothetical protein (fragment)
— OG7
TcIL3000_5_4560 ⚠
U6 snRNA-associated Sm-like protein LSm7p, pu
— OG7
TcIL3000_9_1520 ⚠
ubiquitin-activating enzyme E1, putative
— OG7
TcIL3000_3_880 ⚠
U6 snRNA-associated Sm-like protein LSm8p
— OG7
TcIL3000_5_3890 ⚠
ubiquitin-activating enzyme E1, putative
— OG7
TcIL3000_9_1040 ⚠
U6 snRNA-associated Sm-like protein LSm6p, Sm
— OG7
TcIL3000_0_48480 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_2_320 ⚠
Nop14-like family, putative
— OG7
TcIL3000_2_310 ⚠
Nop14-like family, putative (fragment)
— OG7
TcIL3000_10_10910 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_9_5080 ⚠
replication factor C, subunit 3, putative (fr
— OG7
TcIL3000_6_3350 ⚠
replication factor C, subunit 2, putative
— OG7
TcIL3000_10_1090 ⚠
Domain of unknown function (DUF4042), putativ
— OG7
TcIL3000_0_50610 ⚠
Replication Factor C Subunit 1-related protei
— OG7
TcIL3000_10_6860 ⚠
replication factor C subunit 3, putative
— OG7
TcIL3000_0_25410 ⚠
ATPase family associated with various cellula
— OG7
TcIL3000_0_39040 ⚠
hypothetical protein (fragment)
— OG7
TcIL3000_10_10990 ⚠
bifunctional aminoacyl-tRNA synthetase, putat
— OG7
TcIL3000.11.10020 ⚠
replication factor C, subunit 4, putative
— OG7
TcIL3000_10_7200 ⚠
ribonuclease, putative
— OG7
TcIL3000_0_41370 ⚠
Poly(A)-specific ribonuclease PARN-1
— OG7
TcIL3000_9_5730 ⚠
ribonuclease, putative
— OG7
TcIL3000_4_3490 ⚠
CRAL/TRIO domain containing protein, putative
— OG7
TcIL3000_9_3550 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_7_3050 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_8_2270 ⚠
hypothetical protein, conserved
— OG7
TcIL3000.11.13620 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_0_13010 ⚠
WD domain, G-beta repeat, putative
— OG7
TcIL3000_0_21000 ⚠
hypothetical protein, conserved (fragment)
— OG7
TcIL3000_0_30110 ⚠
WD domain, G-beta repeat, putative
— OG7
TcIL3000_3_1560 ⚠
ATP-dependent DEAD/H RNA helicase, putative (
— OG7
TcIL3000_10_6410 ⚠
ATP-dependent DEAD/H RNA helicase, putative,
— OG7
TcIL3000_3_1550 ⚠
hypothetical protein
— OG7
TcIL3000_0_54850 ⚠
paraflagellar rod component, putative
— OG7
TcIL3000_10_11660 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_10_13390 ⚠
zinc finger protein, putative
— OG7
TcIL3000_6_1570 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_10_11620 ⚠
Zn-finger in Ran binding protein and others/F
— OG7
TcIL3000_7_1320 ⚠
zinc finger protein, putative
— OG7
TcIL3000_7_220 ⚠
FYVE zinc finger, putative
— OG7
TcIL3000.11.6900 ⚠
PUB domain containing protein, putative
— OG7
TcIL3000_0_27090 ⚠
PUB domain containing protein, putative (frag
— OG7
TcIL3000.11.15970 ⚠
zinc finger protein, putative
— OG7
TcIL3000_9_4140 ⚠
predicted zinc finger protein
— OG7
TcIL3000_9_4850 ⚠
zinc finger protein, putative (fragment)
— OG7
TcIL3000_0_30260 ⚠
guide RNA associated protein, GAP2
— OG7
TcIL3000_7_1370 ⚠
NF-X1 type zinc finger/R3H domain containing
— OG7
TcIL3000_3_3580 ⚠
nuclear transcription factor, putative
— OG7
TcIL3000_0_50920 ⚠
cytoskeleton-associated protein, putative
— OG7
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Orthogroup expansion — connections between the query proteins
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How many partner orthogroups appear in the table below. It does not change the analysis — the counts in the summary line always cover all partners.
degree ≤ N
Drops partners that interact with more than N orthogroups across the whole network. Promiscuous hubs connect to everything and explain nothing: the top partner of this query set by raw degree is a retrotransposon hot spot protein touching 586 orthogroups.
Score
(queries touched + 2 if bridge + 0.5 if other-network) ÷ log2(2 + degree). Rewards partners that connect the query set; penalises promiscuity.
Queries
How many of the query proteins' orthogroups this partner interacts with. 2 or more makes it a shared partner.
bridge
It links query proteins that came from different organisms.
other network
At least one of its links is supported only by a dataset from an organism other than that query protein's own — invisible in the network being searched. This is the discovery signal.
complex N
The partner belongs to conserved complex N (two or more datasets).
hub
Degree above 150 — interpret with care.
Click Analyse to look for partners that link the query proteins through the orthogroup network, including links only visible in another organism's dataset.