TcIL3000_4_490

small nuclear ribonucleoprotein sm d3
Trypanosoma congolense IL3000 OG6: OG6_102085 OG7: OG7_0003694 53 interactions (filtered)
Experimental Direct co-fractionation MS evidence Computational Inferred by orthology (OG) transfer ⚠ Ambiguous: multiple orthologs in target organism OG6 / OG7 Ortholog group version used
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Interactions 53 total
Partner Experimental (Co-frac/MS) Computational (OG inference) OG
TcIL3000_7_2270 ⚠
small nuclear ribonucleoprotein SmD1, SmD-1 l
— Both
TcIL3000_10_7200 ⚠
ribonuclease, putative
— OG7
TcIL3000_2_1520 ⚠
small nuclear ribonucleoprotein SmD2, putativ
— Both
TcIL3000_10_12440 ⚠
ATP-dependent RNA helicase HEL67
— Both
TcIL3000.11.12030 ⚠
receptor for activated C kinase 1
— OG7
TcIL3000_6_2360 ⚠
WD domain, G-beta repeat, putative
— OG7
TcIL3000_9_1040 ⚠
U6 snRNA-associated Sm-like protein LSm6p, Sm
— +2 more OG7
TcIL3000_5_4560 ⚠
U6 snRNA-associated Sm-like protein LSm7p, pu
— +2 more OG7
TcIL3000_8_1290 ⚠
hypothetical protein
— OG7
TcIL3000_5_4040 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000_10_5710 ⚠
ATP-dependent RNA helicase DBP2A, putative
— OG7
TcIL3000_6_3760 ⚠
U6 snRNA-associated Sm-like protein LSm5p, pu
— OG7
TcIL3000_9_5730 ⚠
ribonuclease, putative
— OG7
TcIL3000_0_41370 ⚠
Poly(A)-specific ribonuclease PARN-1
— OG7
TcIL3000.11.14090 ⚠
U5 small nuclear ribonucleoprotein component,
— Both
TcIL3000_8_3710 ⚠
mitochondrial, ATP-dependent DEAD/H RNA helic
— OG7
TcIL3000_0_04480 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000_0_56050 ⚠
ATP-dependent DEAD/H RNA helicase, putative
— OG7
TcIL3000.11.9180 ⚠
DEAD-box ATP-dependent RNA helicase, mitochon
— OG7
TcIL3000_8_1270 ⚠
ATP-dependent RNA helicase DBP2B, putative
— OG7
TcIL3000_9_5050 ⚠
leucine-rich repeat protein (LRRP), putative
— OG7
TcIL3000_0_14040 ⚠
leucine-rich repeat protein (LRRP), putative
— OG7
TcIL3000_3_870 ⚠
leucine-rich repeat protein (LRRP), putative
— OG7
TcIL3000_10_4290 ⚠
Protein C21orf2 homolog, putative
— OG7
TcIL3000_8_1370 ⚠
hypothetical protein, conserved
— OG7
TcIL3000_3_1280 ⚠
translation elongation factor EF-2, putative
— OG7
TcIL3000_10_3760 ⚠
elongation factor 2, putative
— OG7
TcIL3000_10_7160 ⚠
RNA-binding protein 14
— Both
TcIL3000.11.11810 ⚠
U5 snRNP-specific 40 kDa protein, putative
— Both
TcIL3000_10_500 ⚠
methyltransferase, putative
— Both
TcIL3000_0_40190 ⚠
heat shock protein 70 (hsp70), putative
— OG6
TcIL3000_0_02950 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_0_21650 ⚠
Hsp70 protein, putative (fragment)
— OG6
TcIL3000_0_55930 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000_0_54460 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000.11.11990 ⚠
luminal binding protein 1 (BiP), putative
— OG6
TcIL3000.11.11940 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000.11.11980 ⚠
heat shock protein 70, putative
— OG6
TcIL3000_0_40210 ⚠
heat shock 70 kDa protein, putative (fragment
— OG6
TcIL3000_0_40200 ⚠
heat shock 70 kDa protein, putative
— OG6
TcIL3000.11.15690 ⚠
U5 snRNP-associated 102 kDa protein, putative
— Both
TcIL3000_9_4540 ⚠
PRP8 protein homologue (fragment)
— Both
TcIL3000_8_4530
u1 small nuclear ribonucleoprotein 70 kDa
— OG6
TcIL3000_8_2230 ⚠
Checkpoint protein HUS1, putative
— Both
TcIL3000_9_4550 ⚠
PRP8 protein homologue (fragment)
— Both
TcIL3000_8_4600 ⚠
Putative snoRNA binding domain containing pro
— Both
TcIL3000_8_5000 ⚠
U6 snRNA-associated sm-like protein Lsm2
— Both
TcIL3000_9_1390 ⚠
hypothetical protein, conserved
— Both
TcIL3000_2_1350 ⚠
WD-repeat protein, putative, pre-mRNA splicin
— Both
TcIL3000_2_890 ⚠
small nuclear ribonucleoprotein SmD1, putativ
— Both
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Orthogroup expansion — connections between the query proteins
list 30/60/…
How many partner orthogroups appear in the table below. It does not change the analysis — the counts in the summary line always cover all partners.
degree ≤ N
Drops partners that interact with more than N orthogroups across the whole network. Promiscuous hubs connect to everything and explain nothing: the top partner of this query set by raw degree is a retrotransposon hot spot protein touching 586 orthogroups.
Score
(queries touched + 2 if bridge + 0.5 if other-network) ÷ log2(2 + degree). Rewards partners that connect the query set; penalises promiscuity.
Queries
How many of the query proteins' orthogroups this partner interacts with. 2 or more makes it a shared partner.
bridge
It links query proteins that came from different organisms.
other network
At least one of its links is supported only by a dataset from an organism other than that query protein's own — invisible in the network being searched. This is the discovery signal.
complex N
The partner belongs to conserved complex N (two or more datasets).
hub
Degree above 150 — interpret with care.
Click Analyse to look for partners that link the query proteins through the orthogroup network, including links only visible in another organism's dataset.